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register, in addition to configuring it as input with the pinmux driver. There was a control register bit commented as "no desc in datasheet". A later revision of the manual reveals the bit to be an input/output control for the timer pin. In addition to configuring capture or pulse mode, you apparently have to separately configure the pin direction in the timer control register. Before this change, the timer block was apparently driving a signal onto a pad configured by pinmux as input. Capture mode still accidentally worked for me during testing because I was using a very strong signal source that just out-muscled the weaker drive from the misconfigured pin.